Publications Google Scholar
    Underlined names indicate supervised students.

  • C. Shane Elder and Catherine E. Welsh. MitoMut: an Efficient Approach to Detecting Mitochondrial DNA Deletions from Paired-end Next-generation Sequencing Data. ACM-BCB, September 2019. link

  • Madeline P. Griffin and Catherine E. Welsh. Comparative Analysis of Tools for Predicting the Functional Impact of mtDNA Variants. ACM-BCB, September 2018. poster pdf

  • Andrew P Morgan, Chen-Ping Fu, Chia-Yu Kao, Catherine E Welsh et al. The Mouse Universal Genotyping Array: From Substrains to Subspecies. G3: Genes, Genomes, Genetics, February 2016. link

  • Andrew P. Morgan and Catherine E Welsh. Informatics resources for the Collaborative Cross and related mouse populations. Mammalian Genome, July 2015. link

  • James J Crowley, Vasyl Zhabotynsky,Wei Sun, Shunping Huang, Isa Kemal Pakatci, Yunjung Kim, Jeremy R Wang, Andrew P Morgan, John D Calaway, David L Aylor, Zaining Yun, Timothy A Bell, Ryan J Buus, Mark E Calaway, John P Didion, Terry J Gooch, Stephanie D Hansen, Nashiya N Robinson, Ginger D Shaw, Jason S Spence, Corey R Quackenbush, Cordelia J Barrick, Randal J Nonneman, Kyungsu Kim, James Xenakis, Yuying Xie, William Valdar, Alan B Lenarcic, Wei Wang, Catherine E Welsh, Chen-Ping Fu, Zhaojun Zhang, James Holt, Zhishan Guo, David W Threadgill, Lisa M Tarantino, Darla R Miller, Fei Zou, Leonard McMillan, Patrick F Sullivan, and Fernando Pardo-Manuel de Villena. Analyses of allele specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. Nature Genetics, 47:353360, May 2015. link

  • Catherine E. Welsh. Computational tools to aid the design and development of a genetic reference population. PhD Thesis. University of North-Carolina at Chapel Hill, December 2014. pdf

  • Catherine E. Welsh, Chen-Ping Fu, Fernando Pardo-Manuel de Villena, and Leonard McMillan. Fine-Scale Recombination Mapping of High-Throughput Sequence Data. ACM-BCB, 2013. pdf

  • Catherine E. Welsh, Darla R. Miller, Kenneth F. Manly, Jeremy Wang, Leonard McMillan, Grant Morahan, Richard Mott, Fuad A. Iraqi, David W. Threadgill, and Fernando Pardo-Manuel de Villena (2012). Status and access to the Collaborative Cross Publication. Mammalian Genome: 10.1007/s00335-012-9410-6

  • Catherine E. Welsh and Leonard McMillan (2012). Accelerating the Inbreeding of Multi-Parental Recombinant Inbred Lines Generated By Sibling Matings. G3: 10.1534/g3.111.001784

  • Chen-ping Fu, Catherine E. Welsh, Fernando Pardo-Manuel de Villena, and Leonard McMillan. Ancestry Inference of Admixed Populations with Microarray Probe Intensities. ACM-BCB, 2012.

  • Collaborative Cross Consortium Catherine. E. Welsh, 2012. The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population. Genetics 190: 389-402.

  • Svenson, Karen. L., Daniel. M. Gatti, William. Valdar, Catherine. E. Welsh, Riyan. Cheng, Elissa J. Chessler, Abraham A. Palmer, Leonard McMillan, and Gary A. Churchill, 2012. High resolution genetic mapping using the mouse Diversity Outbred population. Genetics 190: 437-447.

  • Yang, Hyuna, Wang, Jeremy R, Didion, John P, Buus, Ryan J, Bell, Timothy A, Welsh, Catherine E, Bonhomme, Francois, Yu, Alex Hon-Tsen, Nachman, Michael W, Pialek, Jaroslav, Tucker, Priscilla, Boursot, Pierre, McMillan, Leonard, Churchill, Gary A, & de Villena, Fernando Pardo-Manuel (2011). Subspecific origin and haplotype diversity in the laboratory mouse Nature Genetics : 10.1038/ng.847

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