Publications Google Scholar
    Underlined names indicate supervised students.

  • Kelly McCastlain, Carrie R. Howell, Catherine E. Welsh, Zhaoming Wang, Carmen L. Wilson, Heather Mulder, John Easton, Ann C. Mertens, Jinghui Zhang, Yutaka Yasui, Melissa M. Hudson, Leslie L. Robison, Mondira Kundu, Kirsten K. Ness. The association of mitochondrial copy number with sarcopenia in adult survivors of childhood cancer. Journal of the National Cancer Institute, April 2021. link

  • C. Shane Elder and Catherine E. Welsh. MitoMut: an Efficient Approach to Detecting Mitochondrial DNA Deletions from Paired-end Next-generation Sequencing Data. ACM-BCB, September 2019. link

  • Madeline P. Griffin and Catherine E. Welsh. Comparative Analysis of Tools for Predicting the Functional Impact of mtDNA Variants. ACM-BCB, September 2018. poster pdf

  • Andrew P Morgan, Chen-Ping Fu, Chia-Yu Kao, Catherine E Welsh et al. The Mouse Universal Genotyping Array: From Substrains to Subspecies. G3: Genes, Genomes, Genetics, February 2016. link

  • Andrew P. Morgan and Catherine E Welsh. Informatics resources for the Collaborative Cross and related mouse populations. Mammalian Genome, July 2015. link

  • James J Crowley, Vasyl Zhabotynsky,Wei Sun, Shunping Huang, Isa Kemal Pakatci, Yunjung Kim, Jeremy R Wang, Andrew P Morgan, John D Calaway, David L Aylor, Zaining Yun, Timothy A Bell, Ryan J Buus, Mark E Calaway, John P Didion, Terry J Gooch, Stephanie D Hansen, Nashiya N Robinson, Ginger D Shaw, Jason S Spence, Corey R Quackenbush, Cordelia J Barrick, Randal J Nonneman, Kyungsu Kim, James Xenakis, Yuying Xie, William Valdar, Alan B Lenarcic, Wei Wang, Catherine E Welsh, Chen-Ping Fu, Zhaojun Zhang, James Holt, Zhishan Guo, David W Threadgill, Lisa M Tarantino, Darla R Miller, Fei Zou, Leonard McMillan, Patrick F Sullivan, and Fernando Pardo-Manuel de Villena. Analyses of allele specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. Nature Genetics, 47:353360, May 2015. link

  • Catherine E. Welsh. Computational tools to aid the design and development of a genetic reference population. PhD Thesis. University of North-Carolina at Chapel Hill, December 2014. pdf

  • Catherine E. Welsh, Chen-Ping Fu, Fernando Pardo-Manuel de Villena, and Leonard McMillan. Fine-Scale Recombination Mapping of High-Throughput Sequence Data. ACM-BCB, 2013. pdf

  • Catherine E. Welsh, Darla R. Miller, Kenneth F. Manly, Jeremy Wang, Leonard McMillan, Grant Morahan, Richard Mott, Fuad A. Iraqi, David W. Threadgill, and Fernando Pardo-Manuel de Villena (2012). Status and access to the Collaborative Cross Publication. Mammalian Genome: 10.1007/s00335-012-9410-6

  • Catherine E. Welsh and Leonard McMillan (2012). Accelerating the Inbreeding of Multi-Parental Recombinant Inbred Lines Generated By Sibling Matings. G3: 10.1534/g3.111.001784

  • Chen-ping Fu, Catherine E. Welsh, Fernando Pardo-Manuel de Villena, and Leonard McMillan. Ancestry Inference of Admixed Populations with Microarray Probe Intensities. ACM-BCB, 2012.

  • Collaborative Cross Consortium Catherine. E. Welsh, 2012. The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population. Genetics 190: 389-402.

  • Svenson, Karen. L., Daniel. M. Gatti, William. Valdar, Catherine. E. Welsh, Riyan. Cheng, Elissa J. Chessler, Abraham A. Palmer, Leonard McMillan, and Gary A. Churchill, 2012. High resolution genetic mapping using the mouse Diversity Outbred population. Genetics 190: 437-447.

  • Yang, Hyuna, Wang, Jeremy R, Didion, John P, Buus, Ryan J, Bell, Timothy A, Welsh, Catherine E, Bonhomme, Francois, Yu, Alex Hon-Tsen, Nachman, Michael W, Pialek, Jaroslav, Tucker, Priscilla, Boursot, Pierre, McMillan, Leonard, Churchill, Gary A, & de Villena, Fernando Pardo-Manuel (2011). Subspecific origin and haplotype diversity in the laboratory mouse Nature Genetics : 10.1038/ng.847

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